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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
766
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
22
pCHi-C
19
WGBS
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
766
DNA binding
404
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
214
October, 2019
193
August, 2017
136
June, 2019
95
February, 2021
92
May, 2019
82
November, 2017
73
August, 2021
63
October, 2018
50
May, 2020
46
December, 2017
46
February, 2023
39
May, 2022
26
March, 2020
26
November, 2018
23
October, 2017
22
April, 2019
21
November, 2019
17
July, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
847
bam
795
bed narrowPeak
694
bigWig
458
bigBed narrowPeak
259
fastq
238
tagAlign
186
bed broadPeak
176
bed bed3+
149
bigBed broadPeak
85
txt
64
xls
23
tsv
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1319
Homo sapiens
Biosample type
1328
tissue
634
primary cell
468
cell line
245
in vitro differentiated cells
stem cell
Organ
244
brain
206
pancreas
heart
185
liver
183
kidney
117
blood vessel
117
vasculature
115
limb
96
bone element
85
connective tissue
84
adipose tissue
75
musculature of body
68
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1294
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
746
GRCh38
720
hg19
Lab
1165
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
biosample_type!
stem cell
organ_slims!
heart
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1328 results
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ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
144
20
2
1
3
1
1
islet of Langerhans
69
68
1
7
4
3
1
1
4
kidney
26
75
13
6
1
1
1
bone element
84
body of pancreas
30
4
4
2
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