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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
4
WGBS
3
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
37
DNA binding
4
DNA methylation
3
DNA accessibility
Transcription
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
5
control
Date released
40
August, 2017
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
Available data
bam
43
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
tsv
Organism
45
Homo sapiens
Biosample type
46
tissue
34
in vitro differentiated cells
11
primary cell
1
cell line
1
stem cell
Organ
88
bone element
88
kidney
85
heart
62
pancreas
51
liver
46
connective tissue
45
adipose tissue
37
blood vessel
37
vasculature
35
artery
35
musculature of body
34
eye
27
brain
13
epithelium
11
lung
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
0
bodily fluid
Project
46
AMP
Genome assembly (visualization)
4
hg19
Lab
46
AMP-T2D consortium
assay_slims!
Transcription
files.file_type!
bam
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
islet of Langerhans
1
subcutaneous adipose tissue
1
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