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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
21
ATAC-seq
4
WGBS
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
Transcription
152
DNA binding
22
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
45
control
44
narrow histone mark
37
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
51
August, 2017
50
May, 2020
48
December, 2017
20
May, 2022
5
October, 2019
4
November, 2018
2
March, 2020
1
July, 2019
Available data
136
bam
113
bed narrowPeak
113
bigWig
83
fastq
70
tagAlign
49
bigBed narrowPeak
bed bed3+
3
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
181
Homo sapiens
Biosample type
328
cell line
181
tissue
15
in vitro differentiated cells
3
primary cell
Organ
217
brain
187
pancreas
181
liver
177
heart
116
kidney
115
blood vessel
115
vasculature
96
bone element
84
connective tissue
83
adipose tissue
79
limb
65
artery
42
musculature of body
36
nerve
34
eye
24
spleen
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
181
AMP
Genome assembly (visualization)
110
hg19
80
GRCh38
Lab
161
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
files.file_type!
bed bed3+
bigBed broadPeak
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
tissue
liver
142
20
3
1
1
1
right lobe of liver
10
1
1
1
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