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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
257
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
WGBS
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
Transcription
530
DNA binding
286
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
173
October, 2019
168
August, 2017
95
February, 2021
81
February, 2023
73
August, 2021
50
May, 2020
40
May, 2024
39
May, 2022
31
March, 2020
29
October, 2018
25
November, 2017
22
May, 2019
21
November, 2019
17
October, 2017
16
April, 2019
14
July, 2019
12
December, 2017
11
May, 2023
10
April, 2020
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
November, 2018
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
984
bam
984
bed narrowPeak
855
bigWig
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
961
Homo sapiens
Biosample type
964
tissue
533
primary cell
232
in vitro differentiated cells
191
cell line
8
stem cell
Organ
146
pancreas
137
liver
127
brain
109
heart
96
bone element
96
kidney
78
connective tissue
77
adipose tissue
57
blood vessel
57
vasculature
44
artery
34
eye
34
musculature of body
30
limb
13
epithelium
12
nerve
12
skeleton
11
lung
10
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
930
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
370
GRCh38
335
hg19
Lab
761
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
assay_slims!
Transcription
files.file_type!
bed bedMethyl
bigBed narrowPeak
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
964 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
tissue
islet of Langerhans
71
68
7
4
3
4
liver
107
20
1
1
3
kidney
9
75
6
1
bone element
84
left cardiac atrium
40
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