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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
872
ChIP-seq
258
ATAC-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
Transcription
872
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
169
August, 2017
115
May, 2019
95
February, 2021
81
February, 2023
80
April, 2019
76
November, 2017
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
21
November, 2019
19
October, 2017
17
November, 2018
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
984
bam
984
bed narrowPeak
855
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1334
Homo sapiens
Biosample type
1337
tissue
603
primary cell
488
cell line
232
in vitro differentiated cells
8
stem cell
Organ
208
brain
194
pancreas
184
liver
177
heart
116
kidney
115
blood vessel
115
vasculature
96
bone element
87
connective tissue
86
adipose tissue
79
limb
65
artery
36
nerve
34
eye
30
musculature of body
24
spleen
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1303
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
750
GRCh38
641
hg19
Lab
1136
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
Transcription
files.file_type!
bed broadPeak
organ_slims!
embryo
BIOSAMPLE
ASSAY
1337 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
liver
145
20
3
1
1
1
islet of Langerhans
65
66
7
4
3
1
1
4
1
kidney
27
75
6
1
1
1
bone element
84
heart left ventricle
35
2
4
1
1
1
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