Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
260
ATAC-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
Transcription
833
DNA binding
294
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
598
histone modification
597
histone
313
narrow histone mark
284
broad histone mark
158
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
195
August, 2017
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
23
October, 2017
21
November, 2019
17
November, 2018
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
939
bed narrowPeak
910
bam
810
bigWig
516
bigBed narrowPeak
238
tagAlign
216
fastq
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1291
Homo sapiens
Biosample type
1300
tissue
603
primary cell
488
cell line
255
in vitro differentiated cells
8
stem cell
Organ
217
brain
184
liver
177
heart
157
pancreas
116
kidney
115
blood vessel
115
vasculature
96
bone element
79
limb
65
artery
65
connective tissue
64
adipose tissue
43
musculature of body
36
nerve
34
eye
24
spleen
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1266
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
720
GRCh38
632
hg19
Lab
1097
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
bigBed broadPeak
month_released!
October, 2018
BIOSAMPLE
ASSAY
1300 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
liver
145
20
3
1
1
1
islet of Langerhans
71
68
7
4
3
1
1
4
1
kidney
27
75
6
1
1
1
bone element
84
heart left ventricle
35
2
4
1
1
1
+ See 139 more…
See all biosamples
Download