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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
Transcription
292
DNA binding
246
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
106
August, 2017
95
February, 2021
81
February, 2023
73
August, 2021
68
October, 2019
29
October, 2018
27
March, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
19
May, 2022
15
April, 2019
14
July, 2019
12
December, 2017
11
May, 2023
10
April, 2020
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
November, 2018
2
December, 2019
1
August, 2022
1
January, 2019
1
May, 2021
Available data
984
bam
984
bed narrowPeak
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
692
Homo sapiens
Biosample type
695
tissue
293
primary cell
129
cell line
116
in vitro differentiated cells
5
stem cell
Organ
112
pancreas
96
bone element
95
kidney
74
liver
63
connective tissue
62
adipose tissue
60
heart
54
blood vessel
54
vasculature
51
brain
42
artery
34
eye
28
limb
22
musculature of body
13
epithelium
12
skeleton
11
lung
11
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
663
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
146
GRCh38
107
hg19
Lab
553
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
assay_slims!
Transcription
files.file_type!
bigWig
organ_slims!
embryo
BIOSAMPLE
ASSAY
695 results
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ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
42
65
7
4
3
1
4
kidney
7
75
6
1
1
bone element
84
liver
63
1
1
1
3
subcutaneous abdominal adipose tissue
35
3
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