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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
900
ChIP-seq
259
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
900
DNA binding
469
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
218
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
72
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
30
July, 2019
26
November, 2018
24
March, 2020
23
October, 2017
20
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
January, 2019
6
September, 2017
4
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
978
bed narrowPeak
977
bam
849
bigWig
555
bigBed narrowPeak
267
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1522
Homo sapiens
Biosample type
1531
tissue
646
primary cell
527
cell line
252
in vitro differentiated cells
8
stem cell
Organ
244
brain
211
pancreas
201
heart
186
liver
183
kidney
119
blood vessel
119
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
73
musculature of body
69
artery
38
nerve
37
eye
18
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1497
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
935
GRCh38
820
hg19
Lab
1330
AMP-T2D consortium
81
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
hic
month_released!
January, 2019
organ_slims!
skin of body
BIOSAMPLE
ASSAY
1531 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
islet of Langerhans
71
67
1
7
4
1
1
1
4
kidney
27
75
13
6
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
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