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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
859
ChIP-seq
178
DNase-seq
156
ATAC-seq
87
RNA microarray
27
WGBS
24
pCHi-C
15
Hi-C
12
snATAC-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
859
DNA binding
350
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
623
histone modification
622
histone
322
narrow histone mark
300
broad histone mark
175
control
63
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
68
February, 2023
50
May, 2020
December, 2017
40
May, 2024
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
May, 2022
21
November, 2019
10
April, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
August, 2021
2
December, 2019
2
January, 2018
1
August, 2022
Available data
918
bam
866
bed narrowPeak
819
bigWig
525
bigBed narrowPeak
238
tagAlign
213
bed broadPeak
208
fastq
205
bed bed3+
176
bigBed broadPeak
85
txt
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1371
Homo sapiens
Biosample type
1380
tissue
542
cell line
511
primary cell
171
in vitro differentiated cells
5
stem cell
Organ
244
brain
204
heart
175
pancreas
139
liver
120
blood vessel
120
vasculature
115
limb
102
kidney
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1368
AMP
10
LungMap
2
T1D
Genome assembly (visualization)
830
GRCh38
782
hg19
Lab
1299
AMP-T2D consortium
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
lab.title!
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
month_released!
December, 2017
BIOSAMPLE
ASSAY
1380 results
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ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
Hi-C
snATAC-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
107
2
20
3
1
1
1
islet of Langerhans
71
1
39
4
3
1
1
1
4
bone element
84
heart left ventricle
35
3
2
4
1
1
1
body of pancreas
35
4
4
2
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