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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
856
ChIP-seq
184
ATAC-seq
178
DNase-seq
87
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
856
DNA binding
388
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
600
histone modification
599
histone
303
broad histone mark
296
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
218
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
August, 2021
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
933
bam
892
bed narrowPeak
827
bigWig
561
bigBed narrowPeak
274
fastq
213
bed broadPeak
205
bed bed3+
187
tagAlign
176
bigBed broadPeak
85
txt
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1407
Homo sapiens
Biosample type
1416
tissue
552
primary cell
546
cell line
256
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
204
heart
137
liver
120
blood vessel
120
vasculature
115
limb
102
kidney
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1382
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
846
GRCh38
808
hg19
Lab
1295
AMP-T2D consortium
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
1416 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
67
1
4
7
3
1
1
4
liver
95
20
2
3
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
body of pancreas
35
4
4
2
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