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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
879
ChIP-seq
223
ATAC-seq
174
DNase-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
879
DNA binding
419
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
608
histone modification
607
histone
318
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
194
October, 2019
161
June, 2019
110
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
46
February, 2023
40
May, 2024
39
May, 2022
31
March, 2020
29
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
950
bam
922
bed narrowPeak
828
bigWig
536
bigBed narrowPeak
274
fastq
238
tagAlign
209
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1463
Homo sapiens
Biosample type
1471
tissue
652
primary cell
533
cell line
256
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1447
AMP
24
T1D
Genome assembly (visualization)
879
GRCh38
810
hg19
Lab
1278
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
lab.title!
Xin Sun, UCSD
organ_slims!
artery
BIOSAMPLE
ASSAY
1471 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
4
7
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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