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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
583
ChIP-seq
181
ATAC-seq
178
DNase-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
583
DNA binding
389
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
145
August, 2017
95
February, 2021
91
October, 2019
82
May, 2019
February, 2023
73
August, 2021
63
October, 2018
57
April, 2019
54
November, 2017
46
December, 2017
39
May, 2022
30
July, 2019
29
March, 2020
26
November, 2018
25
May, 2024
23
May, 2020
21
November, 2019
21
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
741
bam
655
bed narrowPeak
587
bigWig
453
bigBed narrowPeak
246
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
128
tagAlign
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
1
bedpe
Organism
1138
Homo sapiens
Biosample type
1145
tissue
525
primary cell
522
cell line
189
in vitro differentiated cells
7
stem cell
Organ
174
kidney
169
pancreas
143
liver
131
heart
129
brain
100
limb
92
bone element
76
adipose tissue
76
connective tissue
67
blood vessel
67
vasculature
66
musculature of body
30
nerve
28
artery
23
spleen
18
ureter
11
lung
8
eye
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1126
AMP
10
LungMap
9
T1D
Genome assembly (visualization)
655
GRCh38
565
hg19
Lab
970
AMP-T2D consortium
82
Katalin Susztak, Upenn
27
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
February, 2023
July, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1145 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
103
20
2
3
1
1
1
kidney
17
75
13
6
1
1
1
islet of Langerhans
34
57
1
5
4
3
1
1
4
bone element
84
body of pancreas
29
4
4
2
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