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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
872
ChIP-seq
259
ATAC-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
13
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
872
DNA binding
304
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
604
histone modification
603
histone
316
narrow histone mark
287
broad histone mark
176
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
182
October, 2019
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
30
July, 2019
30
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
794
bed narrowPeak
783
bam
665
bigWig
372
bigBed narrowPeak
274
fastq
238
tagAlign
85
txt
64
xls
48
bed broadPeak
40
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1338
Homo sapiens
Biosample type
1347
tissue
597
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
219
brain
210
pancreas
187
liver
177
heart
117
blood vessel
117
vasculature
116
kidney
96
bone element
89
connective tissue
88
adipose tissue
83
limb
67
artery
43
musculature of body
nerve
34
eye
25
spleen
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1314
AMP
23
T1D
10
LungMap
Genome assembly (visualization)
751
GRCh38
663
hg19
Lab
1145
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
June, 2019
organ_slims!
nerve
thymus
BIOSAMPLE
ASSAY
1347 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
3
1
1
2
1
islet of Langerhans
71
68
7
4
3
1
1
1
4
kidney
27
75
6
1
1
1
bone element
84
heart left ventricle
35
2
4
1
1
1
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