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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
751
ChIP-seq
238
ATAC-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
751
DNA binding
444
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
557
histone
557
histone modification
279
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
213
October, 2019
163
June, 2019
141
August, 2017
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
40
May, 2024
29
July, 2019
29
March, 2020
23
October, 2017
21
November, 2019
19
May, 2022
19
November, 2018
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
870
bed narrowPeak
847
bam
741
bigWig
512
bigBed narrowPeak
210
bed broadPeak
199
bed bed3+
191
fastq
173
bigBed broadPeak
167
tagAlign
85
txt
64
xls
25
tsv
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1352
Homo sapiens
Biosample type
1361
tissue
543
primary cell
241
in vitro differentiated cells
160
cell line
8
stem cell
Organ
244
brain
214
pancreas
204
heart
184
kidney
liver
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1327
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
854
GRCh38
720
hg19
Lab
1178
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
May, 2020
organ_slims!
liver
pituitary gland
BIOSAMPLE
ASSAY
1361 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
67
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
1
4
1
1
body of pancreas
35
4
4
2
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