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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
695
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
Transcription
695
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
601
histone modification
600
histone
303
broad histone mark
297
narrow histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
193
October, 2019
166
August, 2017
163
June, 2019
95
February, 2021
93
May, 2019
81
February, 2023
73
August, 2021
70
November, 2017
66
April, 2019
45
October, 2018
40
May, 2024
39
May, 2022
36
December, 2017
30
July, 2019
30
March, 2020
May, 2020
23
November, 2018
21
November, 2019
20
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
6
January, 2019
5
March, 2019
3
December, 2018
2
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
1
May, 2021
Available data
957
bed narrowPeak
828
bigWig
790
bam
561
bigBed narrowPeak
213
bed broadPeak
207
fastq
202
bed bed3+
176
bigBed broadPeak
159
tagAlign
85
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1327
Homo sapiens
Biosample type
1335
tissue
520
primary cell
463
cell line
219
in vitro differentiated cells
7
stem cell
Organ
219
brain
188
heart
185
pancreas
178
kidney
114
liver
104
blood vessel
104
vasculature
98
limb
96
bone element
71
musculature of body
66
connective tissue
65
adipose tissue
62
artery
37
eye
27
nerve
18
ureter
17
spleen
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
urinary bladder
Project
1301
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
919
GRCh38
807
hg19
Lab
1134
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
May, 2020
organ_slims!
urinary bladder
target.investigated_as!
control
BIOSAMPLE
ASSAY
1335 results
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ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
58
68
1
7
4
3
1
1
2
kidney
21
75
13
6
1
1
1
liver
75
20
2
3
1
1
1
bone element
84
coronary artery
3
36
2
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