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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
150
DNA accessibility
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
71
August, 2021
68
June, 2019
23
April, 2019
11
May, 2023
4
October, 2019
3
February, 2021
2
December, 2019
2
July, 2019
Available data
153
bed narrowPeak
96
bam
89
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
184
Homo sapiens
Biosample type
184
tissue
30
primary cell
15
cell line
Organ
244
brain
214
pancreas
204
heart
184
kidney
137
liver
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
184
AMP
Genome assembly (visualization)
163
GRCh38
90
hg19
Lab
102
AMP-T2D consortium
82
Katalin Susztak, Upenn
Audit category:
2
audit script error
assay_slims!
Transcription
month_released!
May, 2020
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
184 results
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ATAC-seq
DNase-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
13
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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