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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
185
ATAC-seq
110
DNase-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
Transcription
880
DNA binding
320
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
195
August, 2017
115
May, 2019
95
June, 2019
92
February, 2021
82
November, 2017
81
February, 2023
74
October, 2018
57
April, 2019
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
28
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
August, 2021
2
January, 2018
1
August, 2022
1
May, 2021
Available data
888
bam
831
bed narrowPeak
766
bigWig
474
bigBed narrowPeak
274
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
85
txt
24
bed bedMethyl
24
bigBed bedMethyl
21
tsv
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1357
Homo sapiens
Biosample type
1366
tissue
622
primary cell
532
cell line
233
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
204
heart
187
liver
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1332
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
778
GRCh38
747
hg19
Lab
1245
AMP-T2D consortium
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
organ_slims!
embryo
kidney
BIOSAMPLE
ASSAY
1366 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
4
7
3
1
4
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
body of pancreas
35
4
4
2
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