Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
583
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
583
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
145
August, 2017
95
February, 2021
91
October, 2019
82
May, 2019
81
February, 2023
73
August, 2021
63
October, 2018
57
April, 2019
54
November, 2017
46
December, 2017
39
May, 2022
30
July, 2019
29
March, 2020
26
November, 2018
25
May, 2024
23
May, 2020
21
November, 2019
21
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
741
bam
718
bed narrowPeak
587
bigWig
453
bigBed narrowPeak
246
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
128
tagAlign
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1219
Homo sapiens
Biosample type
1226
tissue
537
primary cell
528
cell line
186
in vitro differentiated cells
7
stem cell
Organ
182
pancreas
174
kidney
166
heart
143
liver
130
brain
102
blood vessel
102
vasculature
100
limb
96
bone element
77
adipose tissue
77
connective tissue
66
musculature of body
63
artery
35
eye
30
nerve
23
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1194
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
690
GRCh38
598
hg19
Lab
1038
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
organ_slims!
embryo
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1226 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
103
20
2
3
1
1
1
islet of Langerhans
34
68
1
7
4
3
1
1
4
kidney
17
75
13
6
1
1
1
bone element
84
coronary artery
3
36
2
+ See 97 more…
See all biosamples
Download