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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
210
ATAC-seq
173
DNase-seq
86
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
834
DNA binding
415
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
194
October, 2019
160
June, 2019
95
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
73
August, 2021
65
May, 2019
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
34
February, 2023
29
March, 2020
26
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
1
May, 2021
Available data
901
bam
872
bed narrowPeak
789
bigWig
499
bigBed narrowPeak
274
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
85
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
24
tsv
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1408
Homo sapiens
Biosample type
1417
tissue
488
cell line
408
primary cell
234
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1383
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
840
GRCh38
759
hg19
Lab
1214
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
organ_slims!
epithelium
vasculature
BIOSAMPLE
ASSAY
1417 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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