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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
19
ChIP-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
72
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
9
control
5
nucleotide modification
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
129
August, 2017
125
February, 2021
122
May, 2022
113
May, 2021
111
February, 2023
105
August, 2021
56
May, 2020
50
October, 2019
46
March, 2020
40
May, 2024
26
July, 2019
16
January, 2021
14
November, 2017
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
4
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2023
Available data
108
bed narrowPeak
64
xls
bam
33
bigWig
24
tagAlign
6
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
114
Homo sapiens
Biosample type
77
tissue
33
cell line
5
in vitro differentiated cells
Organ
73
kidney
22
liver
13
pancreas
8
epithelium
5
connective tissue
1
adipose tissue
Project
115
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
71
Katalin Susztak, Upenn
26
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bam
month_released!
April, 2018
BIOSAMPLE
ASSAY
115 results
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ATAC-seq
ChIP-seq
MeRIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
4
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
EndoC_BH1
6
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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