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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • Transcription
  • 443DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 37control
  • 29transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 129August, 2017
  • 125February, 2021
  • 122May, 2022
  • 113May, 2021
  • 111February, 2023
  • 105August, 2021
  • 56May, 2020
  • 50October, 2019
  • 46March, 2020
  • 40May, 2024
  • 26July, 2019
  • 16January, 2021
  • 14November, 2017
  • 11May, 2023
  • 10April, 2020
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 4March, 2019
  • 4October, 2022
  • 3September, 2020
  • 2December, 2019
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2023
Available data
  • bam
  • 1817bed narrowPeak
  • 1767bigWig
  • 1042bigBed narrowPeak
  • 987fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101zippedFastqFolder
  • 89txt
  • 64xls
  • 56tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1023Homo sapiens
Biosample type
  • 566tissue
  • 295primary cell
  • 92in vitro differentiated cells
  • 69cell line
  • 5stem cell
Organ
  • 190pancreas
  • 152epithelium
  • 97kidney
  • 89bone element
  • 86heart
  • 84connective tissue
  • 79liver
  • 46adipose tissue
  • 42vasculature
  • 41blood vessel
  • 36musculature of body
  • 35artery
  • 35eye
  • 31brain
  • 11lung
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5limb
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 818AMP
  • 147HPAP
  • 51T1D
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 212hg19
  • 167GRCh38
  • 5hg18
Lab
  • 553AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 126Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 136inconsistent ontology term
  • 35audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
assay_slims!
  • Transcription
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1027 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
islet of Langerhans304174314
bone element84
kidney75611
liver20233111
left cardiac atrium40
primary cell
pancreatic alpha cell29311
Langerhans cell48
CD8-positive, alpha-beta T cell331
pancreatic beta cell16161
naive thymus-derived CD4-positive, alpha-beta T cell2221
in vitro differentiated cells
embryonic stem cell6371
adipocyte8141
chondrocyte5
cardiomyocytes (cardiac muscle cell)22
immature adipocyte2
cell line
EndoC_BH118162321
HepG2192221
HEK293T2
GM128781
MCF-71
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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