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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
675
ChIP-seq
25
ATAC-seq
5
WGBS
4
RRBS
4
pCHi-C
3
Hi-C
2
STARR-seq
1
DNase-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
675
DNA binding
Transcription
27
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
339
transcription factor
205
histone modification
204
histone
128
control
105
broad histone mark
99
narrow histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
October, 2019
63
December, 2017
51
August, 2017
51
May, 2020
50
November, 2018
28
May, 2019
23
August, 2021
20
May, 2022
16
October, 2017
6
July, 2019
4
March, 2020
1
December, 2018
1
February, 2021
1
February, 2023
Available data
662
bam
590
bigWig
563
bed narrowPeak
485
bigBed narrowPeak
481
fastq
166
tagAlign
110
bed broadPeak
101
bigBed broadPeak
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
4
tsv
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
vcf
Organism
721
Homo sapiens
Biosample type
386
cell line
308
tissue
15
in vitro differentiated cells
12
primary cell
Organ
579
liver
422
pancreas
272
epithelium
191
heart
172
connective tissue
142
brain
127
kidney
113
vasculature
109
blood vessel
97
bone element
83
adipose tissue
69
blood
69
bodily fluid
55
artery
53
musculature of body
31
eye
24
spleen
20
embryo
18
limb
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
721
AMP
Genome assembly (visualization)
494
hg19
448
GRCh38
Lab
679
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bed3+
month_released!
October, 2019
BIOSAMPLE
ASSAY
721 results
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ChIP-seq
ATAC-seq
WGBS
RRBS
pCHi-C
Hi-C
STARR-seq
DNase-seq
FAIRE-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
1
2
2
1
tissue
liver
137
20
3
1
1
1
layer of hippocampus
22
brain
15
1
1
caudate nucleus
15
substantia nigra
15
+ See 10 more…
in vitro differentiated cells
hepatocyte
15
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
hepatocyte
1
1
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