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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
36
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
Available data
231
bam
210
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
bed bed3
1
tagAlign bed3+
Organism
261
Homo sapiens
Biosample type
243
tissue
18
primary cell
Organ
597
liver
467
pancreas
323
epithelium
261
brain
229
kidney
227
heart
197
connective tissue
169
vasculature
163
blood vessel
115
limb
93
bone element
90
adipose tissue
87
musculature of body
83
artery
51
blood
51
bodily fluid
42
eye
38
nerve
23
embryo
22
vein
18
spleen
18
ureter
11
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
261
AMP
Genome assembly (visualization)
205
GRCh38
151
hg19
Lab
261
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
files.file_type!
bed bed3
month_released!
January, 2019
BIOSAMPLE
ASSAY
261 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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