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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
60
ChIP-seq
9
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
Transcription
60
DNA binding
17
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
May, 2021
Available data
84
txt
68
bam
62
bed narrowPeak
60
fastq
55
bigWig
54
bigBed narrowPeak
bed bed3
Organism
162
Homo sapiens
Biosample type
92
tissue
61
cell line
9
primary cell
Organ
597
liver
467
pancreas
323
epithelium
261
brain
229
kidney
227
heart
197
connective tissue
169
vasculature
163
blood vessel
115
limb
93
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
11
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
153
AMP
9
T1D
Genome assembly (visualization)
63
hg19
62
GRCh38
Lab
153
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_slims!
Transcription
files.file_type!
bed bed3
organ_slims!
skin of body
BIOSAMPLE
ASSAY
162 results
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RNA microarray
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 4 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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