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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
STARR-seq
1
whole genome sequencing assay
Assay category
466
DNA binding
Transcription
29
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
63
December, 2017
52
November, 2018
33
August, 2017
22
August, 2021
20
May, 2022
6
October, 2019
2
February, 2021
2
July, 2019
2
June, 2019
2
March, 2020
1
December, 2018
1
May, 2020
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
509
Homo sapiens
Biosample type
374
cell line
116
tissue
15
in vitro differentiated cells
4
primary cell
Organ
509
liver
442
pancreas
310
epithelium
225
kidney
213
heart
178
connective tissue
161
vasculature
156
blood vessel
142
brain
114
limb
97
bone element
80
adipose tissue
77
artery
69
blood
69
bodily fluid
68
musculature of body
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
509
AMP
Genome assembly (visualization)
419
hg19
337
GRCh38
Lab
467
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bedMethyl
tagAlign
organ_slims!
skeleton
BIOSAMPLE
ASSAY
509 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
STARR-seq
whole genome sequencing assay
cell line
HepG2
366
1
2
2
2
1
tissue
liver
75
20
2
1
3
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
hepatocyte
1
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