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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
4
WGBS
2
pCHi-C
1
DNase-seq
Assay category
Transcription
73
DNA binding
7
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
55
August, 2017
23
October, 2018
1
August, 2018
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
fastq
43
bam
26
bigWig
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
1
tsv
Organism
86
Homo sapiens
Biosample type
85
tissue
1
in vitro differentiated cells
Organ
593
liver
449
pancreas
296
epithelium
230
brain
184
heart
181
connective tissue
160
vasculature
157
blood vessel
144
kidney
97
bone element
86
adipose tissue
82
limb
81
artery
69
blood
69
bodily fluid
40
musculature of body
38
nerve
34
eye
23
embryo
23
spleen
22
vein
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
files.file_type!
bed bedMethyl
month_released!
June, 2019
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
1
1
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in vitro differentiated cells
white fat cell
1
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