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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
2
Capture-C
Assay category
Transcription
87
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
33
February, 2021
3
October, 2022
2
August, 2021
Available data
101
zippedFastqFolder
43
fastq
bigWig
6
tsv
4
bed narrowPeak
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
3
txt
2
bed bed3+
Organism
139
Homo sapiens
Biosample type
137
primary cell
2
in vitro differentiated cells
Organ
89
epithelium
89
pancreas
2
connective tissue
Project
137
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
877
AMP-T2D consortium
137
Klaus Kaestner, Upenn
106
Kyle Gaulton, UCSD
82
Katalin Susztak, Upenn
14
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
30
audit script error
assay_slims!
Transcription
files.file_type!
bed bedgraph
bigWig
BIOSAMPLE
ASSAY
139 results
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snATAC-seq
WGBS
ATAC-seq
Hi-C
Capture-C
primary cell
pancreatic alpha cell
31
22
1
Langerhans cell
48
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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