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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
39
DNase-seq
24
ATAC-seq
4
Hi-C
4
pCHi-C
1
WGBS
Assay category
68
DNA binding
63
DNA accessibility
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
17
control
17
narrow histone mark
Date released
72
October, 2019
35
June, 2019
15
February, 2023
7
May, 2019
6
February, 2021
5
July, 2019
Available data
113
bam
110
bed narrowPeak
90
bigWig
87
bigBed narrowPeak
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
140
tissue
Organ
598
liver
467
pancreas
epithelium
262
brain
229
kidney
227
heart
199
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
110
hg19
95
GRCh38
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bed bedgraph
organ_slims!
epithelium
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
retina
3
15
muscle of arm
17
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