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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
5
RRBS
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
26
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
13
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
January, 2018
1
May, 2022
Available data
61
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
40
Homo sapiens
Biosample type
29
tissue
11
primary cell
Organ
535
liver
446
pancreas
301
epithelium
215
brain
197
heart
192
connective tissue
152
vasculature
151
kidney
150
blood vessel
97
bone element
86
adipose tissue
79
artery
79
limb
68
blood
68
bodily fluid
40
musculature of body
38
eye
36
nerve
24
spleen
22
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
20
hg19
14
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
files.file_type!
bed broadPeak
month_released!
January, 2018
March, 2023
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
Hi-C
RRBS
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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