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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
5
RRBS
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
snATAC-seq
Assay category
11
DNA binding
Transcription
5
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
6
histone
6
histone modification
5
control
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
3
March, 2020
2
June, 2019
1
January, 2018
1
July, 2019
1
May, 2022
Available data
23
bigWig
bed narrowPeak
15
tagAlign
14
bed broadPeak
11
bam
9
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
tsv
1
txt
Organism
21
Homo sapiens
Biosample type
18
tissue
3
primary cell
Organ
253
pancreas
172
epithelium
157
liver
128
connective tissue
89
bone element
77
adipose tissue
59
brain
46
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
7
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bed narrowPeak
organ_slims!
limb
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
RRBS
Hi-C
ATAC-seq
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
psoas muscle
2
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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