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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 546ChIP-seq
  • 253ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • Transcription
  • 546DNA binding
  • 340DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 340control
  • 166histone
  • 166histone modification
  • 85narrow histone mark
  • 81broad histone mark
  • 45transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
  • 1recombinant protein
Date released
  • 180August, 2017
  • 129February, 2021
  • 124May, 2020
  • 102May, 2022
  • 95October, 2019
  • 93November, 2017
  • 84May, 2021
  • 46February, 2023
  • 46March, 2020
  • 36July, 2019
  • 33August, 2021
  • 29October, 2018
  • 23May, 2019
  • 22December, 2017
  • 16January, 2021
  • 15April, 2019
  • 14November, 2018
  • 11May, 2023
  • 11October, 2017
  • 10April, 2020
  • 10November, 2020
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 4January, 2019
  • 4November, 2019
  • 4October, 2022
  • 3September, 2020
  • 2December, 2019
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1986bam
  • bed narrowPeak
  • 1767bigWig
  • 1042bigBed narrowPeak
  • 987fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101zippedFastqFolder
  • 89txt
  • 64xls
  • 56tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1191Homo sapiens
Biosample type
  • 566tissue
  • 357primary cell
  • 143cell line
  • 124in vitro differentiated cells
  • 6stem cell
Organ
  • 253pancreas
  • 172epithelium
  • 157liver
  • 128connective tissue
  • 89bone element
  • 77adipose tissue
  • 59brain
  • 46kidney
  • 36heart
  • 36vasculature
  • 34blood vessel
  • 27musculature of body
  • 23limb
  • 15blood
  • 15bodily fluid
  • 11lung
  • 11nerve
  • 11spleen
  • 9artery
  • 9embryo
  • 9eye
  • 9vein
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 987AMP
  • 147HPAP
  • 51T1D
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 212hg19
  • 94GRCh38
  • 5hg18
Lab
  • 893AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 96Kyle Gaulton, UCSD
  • 18Katalin Susztak, Upenn
  • 14Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 151inconsistent ontology term
  • 35audit script error
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
assay_slims!
  • Transcription
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

1196 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
islet of Langerhans513174314
bone element84
liver633111
subcutaneous abdominal adipose tissue353
kidney711611
primary cell
pancreatic alpha cell629311
Langerhans cell48
pancreatic beta cell616161
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
cell line
HepG27112221
EndoC_BH1218162321
Panc171
GM1287861
HEK293T2
in vitro differentiated cells
embryonic stem cell3851
adipocyte2571
neural progenitor cell8
pancreatic endoderm61
chondrocyte5
stem cell
hESC11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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