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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
46
ATAC-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
Assay category
95
DNA binding
47
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
21
control
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
41
October, 2019
35
February, 2023
14
February, 2021
6
July, 2019
2
March, 2020
1
November, 2017
Available data
129
bed narrowPeak
122
bam
92
bigWig
79
bigBed narrowPeak
13
bed broadPeak
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
tsv
Organism
149
Homo sapiens
Biosample type
114
tissue
21
primary cell
14
cell line
Organ
533
liver
451
pancreas
293
epithelium
222
brain
192
connective tissue
151
vasculature
149
blood vessel
137
heart
121
kidney
97
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
38
eye
36
nerve
23
embryo
23
spleen
18
vein
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
149
AMP
Genome assembly (visualization)
118
GRCh38
89
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
files.file_type!
bigBed broadPeak
tsv
month_released!
April, 2019
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
tibial artery
23
1
thoracic aorta
16
1
aorta
13
1
2
ascending aorta
16
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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