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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
13
ATAC-seq
6
Hi-C
5
RRBS
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
14
DNA accessibility
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
8
February, 2021
7
May, 2019
6
July, 2019
4
February, 2023
3
March, 2020
1
January, 2018
1
May, 2022
Available data
68
bed narrowPeak
62
bigWig
59
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
66
Homo sapiens
Biosample type
55
tissue
11
primary cell
Organ
535
liver
425
pancreas
286
epithelium
224
brain
197
heart
193
connective tissue
152
vasculature
151
kidney
150
blood vessel
97
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
46
hg19
22
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
files.file_type!
bigBed broadPeak
month_released!
November, 2019
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
acetabular part of hip bone
1
+ See 11 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
See all biosamples
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