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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
34
ChIP-seq
1
pCHi-C
Assay category
Transcription
45
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
24
October, 2019
14
February, 2021
5
May, 2019
1
July, 2019
1
May, 2021
Available data
74
bed narrowPeak
48
bam
31
bigWig
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
Organism
80
Homo sapiens
Biosample type
65
tissue
14
cell line
1
primary cell
Organ
535
liver
pancreas
301
epithelium
224
brain
197
heart
194
connective tissue
152
vasculature
151
kidney
150
blood vessel
97
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
79
AMP
1
T1D
Genome assembly (visualization)
70
GRCh38
35
hg19
Lab
79
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_slims!
Transcription
files.file_type!
bigBed broadPeak
organ_slims!
pancreas
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
ChIP-seq
pCHi-C
tissue
coronary artery
36
5
tibial artery
1
23
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
megakaryocyte
1
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