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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
124
DNA binding
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
28
control
12
broad histone mark
Date released
85
October, 2019
28
November, 2017
10
October, 2017
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
231
bam
210
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
135
Homo sapiens
Biosample type
128
tissue
7
primary cell
Organ
369
pancreas
241
epithelium
238
liver
175
connective tissue
135
brain
130
heart
124
kidney
97
bone element
83
vasculature
81
blood vessel
80
adipose tissue
58
artery
musculature of body
36
eye
31
limb
23
embryo
15
blood
15
bodily fluid
12
nerve
12
skeleton
12
spleen
11
lung
7
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
87
hg19
79
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
Transcription
files.file_type!
bigBed narrowPeak
hic
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
tissue
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
cerebellum (Hemisphere)
3
1
+ See 67 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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