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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
13
ATAC-seq
6
RRBS
4
Hi-C
2
DNase-seq
Assay category
28
DNA binding
15
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
12
control
8
broad histone mark
8
narrow histone mark
Date released
18
October, 2019
12
February, 2023
8
July, 2019
5
December, 2017
4
August, 2021
2
June, 2019
2
November, 2017
1
March, 2020
1
May, 2019
Available data
83
bam
78
bed narrowPeak
71
bigWig
bigBed narrowPeak
25
fastq
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
hdf5
2
hic
1
bedpe bed3+
1
tar
tsv
Organism
53
Homo sapiens
Biosample type
36
primary cell
12
tissue
5
in vitro differentiated cells
Organ
pancreas
239
epithelium
238
liver
173
connective tissue
133
brain
130
heart
118
kidney
97
bone element
85
vasculature
83
blood vessel
79
adipose tissue
58
artery
39
musculature of body
36
eye
31
limb
23
embryo
15
blood
15
bodily fluid
12
nerve
12
skeleton
11
spleen
10
lung
9
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
53
AMP
Genome assembly (visualization)
38
hg19
12
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
files.file_type!
bigBed narrowPeak
tsv
organ_slims!
pancreas
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
ATAC-seq
RRBS
Hi-C
DNase-seq
primary cell
endothelial cell of umbilical vein
7
2
epithelial cell of proximal tubule
8
1
hepatocyte
4
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 7 more…
tissue
pigmented layer of retina
12
in vitro differentiated cells
Hepatic endoderm
4
hepatocyte
1
See all biosamples
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