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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
115
DNA binding
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
90
histone
90
histone modification
83
narrow histone mark
25
control
7
broad histone mark
Date released
85
October, 2019
28
November, 2017
October, 2017
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
222
bam
203
bigWig
197
bed narrowPeak
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
125
Homo sapiens
Biosample type
118
tissue
7
primary cell
Organ
217
pancreas
198
liver
169
connective tissue
142
epithelium
125
brain
96
bone element
93
heart
86
vasculature
84
blood vessel
79
adipose tissue
58
artery
41
kidney
40
musculature of body
36
eye
31
limb
23
embryo
12
nerve
12
skeleton
11
spleen
9
vein
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
87
hg19
78
GRCh38
Lab
125
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bigBed narrowPeak
month_released!
October, 2017
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
tissue
cingulate gyrus
8
brain
5
1
1
layer of hippocampus
7
substantia nigra
5
superior frontal gyrus
4
+ See 67 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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