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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
264
DNA binding
Transcription
15
DNA methylation
1
DNA accessibility
Target of assay
169
histone modification
168
histone
91
broad histone mark
76
narrow histone mark
50
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
280
August, 2017
216
May, 2021
214
October, 2019
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
111
February, 2023
94
November, 2017
48
March, 2020
44
December, 2017
41
July, 2019
41
November, 2019
40
May, 2024
32
September, 2018
29
October, 2018
24
February, 2018
23
May, 2019
17
October, 2017
16
April, 2019
16
January, 2021
14
November, 2018
11
May, 2023
11
November, 2020
10
April, 2020
8
January, 2018
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
4
January, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
198
fastq
193
bam
183
bigWig
142
bed narrowPeak
85
tagAlign
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
279
Homo sapiens
Biosample type
173
tissue
67
in vitro differentiated cells
40
primary cell
Organ
122
connective tissue
82
pancreas
55
adipose tissue
48
liver
26
epithelium
26
musculature of body
Project
280
AMP
Genome assembly (visualization)
145
hg19
122
GRCh38
Lab
280
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
10
inconsistent control read length
assay_slims!
Transcription
files.file_type!
bigBed narrowPeak
month_released!
June, 2019
organ_slims!
thymus
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
tissue
liver
43
3
1
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
+ See 3 more…
in vitro differentiated cells
adipocyte
67
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
1
1
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