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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
6
WGBS
4
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
67
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
55
August, 2017
18
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2019
1
October, 2017
Available data
44
bam
44
fastq
27
bigWig
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
79
Homo sapiens
Biosample type
79
tissue
1
in vitro differentiated cells
Organ
376
pancreas
247
epithelium
240
liver
175
connective tissue
135
brain
133
heart
125
kidney
97
bone element
86
vasculature
84
blood vessel
80
adipose tissue
58
artery
40
musculature of body
36
eye
31
limb
23
embryo
15
blood
15
bodily fluid
12
nerve
skeleton
12
spleen
11
lung
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
files.file_type!
bigBed narrowPeak
organ_slims!
skeleton
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
10
1
omental fat pad
8
1
adipose tissue
1
3
2
1
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in vitro differentiated cells
white fat cell
1
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