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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
10
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
13
DNA binding
10
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
146
February, 2021
139
August, 2017
120
May, 2022
108
February, 2023
93
October, 2019
89
May, 2021
79
May, 2020
72
November, 2017
42
March, 2020
36
August, 2021
30
November, 2019
29
October, 2018
23
July, 2019
23
May, 2019
22
December, 2017
16
January, 2021
15
April, 2019
11
November, 2020
10
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
4
January, 2019
4
October, 2022
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
42
bed narrowPeak
34
bam
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
35
Homo sapiens
Biosample type
20
in vitro differentiated cells
13
cell line
2
tissue
1
primary cell
Organ
9
liver
3
connective tissue
3
epithelium
3
pancreas
2
kidney
1
adipose tissue
Project
36
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
Katalin Susztak, Upenn
22
AMP-T2D consortium
12
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bigWig
lab.title!
Anna Gloyn, Oxford
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
8
10
adipocyte
1
osteoblast
1
cell line
HepG2
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
subcutaneous adipose tissue
1
primary cell
hepatocyte
1
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