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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 395ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 29Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • Transcription
  • 482DNA accessibility
  • 481DNA binding
  • 80DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Target of assay
  • 320control
  • 148histone
  • 148histone modification
  • 74broad histone mark
  • 74narrow histone mark
  • 18transcription factor
  • 8RNA binding protein
  • 5nucleotide modification
  • 1recombinant protein
Date released
  • 146February, 2021
  • 139August, 2017
  • 120May, 2022
  • 108February, 2023
  • 107August, 2021
  • 93October, 2019
  • 89May, 2021
  • 79May, 2020
  • 72November, 2017
  • 42March, 2020
  • 30November, 2019
  • 29October, 2018
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 16January, 2021
  • 15April, 2019
  • 11May, 2023
  • 11November, 2020
  • 10April, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 4January, 2019
  • 4October, 2022
  • 2December, 2019
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1986bam
  • 1817bed narrowPeak
  • bigWig
  • 1042bigBed narrowPeak
  • 987fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101zippedFastqFolder
  • 89txt
  • 64xls
  • 56tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1241Homo sapiens
Biosample type
  • 695tissue
  • 293primary cell
  • 129cell line
  • 124in vitro differentiated cells
  • 5stem cell
Organ
  • 250pancreas
  • 168epithelium
  • 138liver
  • 110kidney
  • 107connective tissue
  • 97bone element
  • 73heart
  • 72vasculature
  • 71blood vessel
  • 63adipose tissue
  • 52artery
  • 52brain
  • 36eye
  • 28limb
  • 25musculature of body
  • 14blood
  • 14bodily fluid
  • 12skeleton
  • 11lung
  • 11nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1047AMP
  • 137HPAP
  • 51T1D
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 196GRCh38
  • 196hg19
Lab
  • 881AMP-T2D consortium
  • 137Klaus Kaestner, Upenn
  • 106Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 14Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 156inconsistent ontology term
  • 35audit script error
  • 1inconsistent replicate
Audit category:
  • 3missing controlled_by
assay_slims!
  • Transcription
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

1246 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
islet of Langerhans426574314
kidney775611
bone element84
liver633111
subcutaneous abdominal adipose tissue353
primary cell
pancreatic alpha cell622311
Langerhans cell48
pancreatic beta cell613161
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
cell line
HepG25212221
EndoC_BH1217162321
smooth muscle cell of the coronary artery28
Panc17
GM128786
in vitro differentiated cells
embryonic stem cell381
adipocyte2051
neural progenitor cell810
pancreatic endoderm6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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