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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
4
ATAC-seq
3
WGBS
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
Transcription
28
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
24
histone
24
histone modification
16
broad histone mark
8
narrow histone mark
4
control
Date released
31
August, 2017
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Available data
44
bam
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
37
Homo sapiens
Biosample type
38
tissue
Organ
237
pancreas
229
kidney
221
heart
206
epithelium
157
vasculature
154
blood vessel
131
brain
115
limb
97
bone element
83
connective tissue
77
artery
70
musculature of body
64
liver
42
eye
38
adipose tissue
38
nerve
22
vein
18
ureter
12
skeleton
11
lung
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
fastq
tagAlign
organ_slims!
pericardium
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
28
3
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
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