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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
4
ATAC-seq
3
WGBS
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
Transcription
25
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
narrow histone mark
5
control
Date released
28
August, 2017
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Available data
43
bam
fastq
25
bigWig
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
34
Homo sapiens
Biosample type
35
tissue
Organ
224
pancreas
214
kidney
192
epithelium
187
heart
139
vasculature
136
blood vessel
128
brain
100
limb
97
bone element
97
liver
85
connective tissue
77
artery
72
musculature of body
39
eye
35
adipose tissue
30
nerve
18
ureter
16
vein
12
skeleton
11
lung
9
blood
9
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
fastq
organ_slims!
pericardium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
25
3
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
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