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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
15
RRBS
14
ATAC-seq
12
WGBS
4
Hi-C
2
FAIRE-seq
2
RNA microarray
Assay category
Transcription
27
DNA methylation
16
DNA accessibility
15
DNA binding
4
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
283
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
41
November, 2019
40
May, 2024
39
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
34
bigWig
32
bam
23
bed bedMethyl
23
bigBed bedMethyl
19
bed narrowPeak
17
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
hdf5
2
tsv
Organism
64
Homo sapiens
Biosample type
55
tissue
9
primary cell
Organ
20
brain
14
heart
7
epithelium
7
kidney
7
pancreas
6
musculature of body
5
limb
5
vasculature
4
blood vessel
2
connective tissue
2
liver
1
adipose tissue
1
artery
1
eye
1
pericardium
1
spleen
Project
64
AMP
Genome assembly (visualization)
35
hg19
28
GRCh38
Lab
63
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
files.file_type!
hdf5
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ChIP-seq
RRBS
ATAC-seq
WGBS
Hi-C
FAIRE-seq
RNA microarray
tissue
brain
15
1
heart left ventricle
1
2
4
body of pancreas
4
gastrocnemius medialis
4
aorta
2
+ See 19 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
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