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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
75
ATAC-seq
34
DNase-seq
8
WGBS
7
pCHi-C
3
Hi-C
3
RRBS
Assay category
Transcription
139
DNA binding
109
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Target of assay
100
histone
100
histone modification
57
broad histone mark
43
narrow histone mark
21
control
18
transcription factor
12
RNA binding protein
Date released
62
February, 2023
57
April, 2019
42
June, 2019
40
May, 2024
21
May, 2019
15
July, 2019
14
February, 2021
13
October, 2019
5
March, 2020
Available data
224
bed narrowPeak
160
bigWig
148
bam
100
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
269
Homo sapiens
Biosample type
241
tissue
14
cell line
14
primary cell
Organ
597
liver
466
pancreas
321
epithelium
259
brain
229
kidney
227
heart
202
connective tissue
167
vasculature
161
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
269
AMP
Genome assembly (visualization)
202
GRCh38
152
hg19
Lab
229
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
hdf5
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
retinal pigment epithelial cell
3
1
1
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