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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
pCHi-C
2
RRBS
Assay category
Transcription
123
DNA binding
77
DNA accessibility
10
DNA methylation
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
RNA binding protein
Date released
54
April, 2019
35
February, 2023
35
May, 2024
34
June, 2019
19
May, 2019
14
February, 2021
14
July, 2019
5
October, 2019
3
March, 2020
Available data
180
bed narrowPeak
143
bigWig
135
bam
88
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
hic
3
tsv
Organism
213
Homo sapiens
Biosample type
191
tissue
14
cell line
8
primary cell
Organ
538
liver
405
pancreas
274
epithelium
259
brain
225
kidney
213
heart
193
connective tissue
161
vasculature
156
blood vessel
115
limb
97
bone element
85
adipose tissue
85
musculature of body
82
artery
59
blood
59
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
185
GRCh38
109
hg19
Lab
178
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
hic
month_released!
September, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
RRBS
tissue
heart left ventricle
32
2
3
4
1
1
coronary artery
4
36
2
left cardiac atrium
35
1
heart
14
18
1
heart right ventricle
13
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
4
3
1
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