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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
41
DNA accessibility
6
DNA methylation
Date released
328
November, 2017
237
August, 2017
235
October, 2019
218
June, 2019
139
May, 2022
127
May, 2021
120
May, 2019
115
August, 2021
104
February, 2023
101
May, 2020
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
52
February, 2021
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
3
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
txt
33
fastq
19
bam
15
bed narrowPeak
9
tsv
tagAlign
6
bigWig
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
52
Homo sapiens
Biosample type
35
primary cell
10
cell line
4
in vitro differentiated cells
3
tissue
Organ
8
artery
8
blood vessel
8
bone element
8
heart
skeleton
8
vasculature
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
2
liver
Project
33
HPAP
19
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
33
Klaus Kaestner, Upenn
19
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
assay_slims!
Transcription
files.file_type!
tagAlign
txt
organ_slims!
skeleton
BIOSAMPLE
ASSAY
52 results
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snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
tissue
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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