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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
466
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
63
December, 2017
53
November, 2018
34
August, 2017
22
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
March, 2020
1
December, 2018
1
May, 2020
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
tsv
1
vcf
Organism
510
Homo sapiens
Biosample type
375
cell line
115
tissue
15
in vitro differentiated cells
5
primary cell
Organ
510
liver
439
pancreas
312
epithelium
227
kidney
216
heart
179
connective tissue
160
vasculature
154
blood vessel
142
brain
115
limb
97
bone element
81
adipose tissue
77
artery
69
blood
69
bodily fluid
69
musculature of body
42
eye
38
nerve
24
spleen
23
embryo
21
vein
18
ureter
skeleton
10
lung
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
510
AMP
Genome assembly (visualization)
420
hg19
338
GRCh38
Lab
468
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
tagAlign
month_released!
March, 2020
organ_slims!
skeleton
BIOSAMPLE
ASSAY
510 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
366
1
1
2
2
2
1
tissue
liver
75
20
2
3
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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