Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
48
snATAC-seq
41
WGBS
10
MeRIP-seq
3
Hi-C
Assay category
Transcription
97
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
101
May, 2022
27
February, 2021
10
November, 2020
7
August, 2020
3
October, 2022
3
September, 2020
Available data
101
zippedFastqFolder
43
fastq
10
bigWig
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
151
Homo sapiens
Biosample type
141
primary cell
6
cell line
4
tissue
Organ
103
pancreas
99
epithelium
Project
141
HPAP
10
AMP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2297
AMP-T2D consortium
228
Kyle Gaulton, UCSD
141
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
6
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
tsv
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
151 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
WGBS
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
25
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
Download