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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
1
WGBS
Assay category
51
DNA binding
44
DNA accessibility
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
52
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
Available data
96
bam
78
bed narrowPeak
73
bigWig
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
100
Homo sapiens
Biosample type
100
tissue
Organ
538
liver
394
pancreas
274
epithelium
187
heart
170
connective tissue
150
kidney
145
brain
143
vasculature
138
blood vessel
100
limb
97
bone element
78
adipose tissue
77
artery
74
musculature of body
68
blood
bodily fluid
39
eye
30
nerve
23
spleen
18
ureter
16
vein
15
embryo
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
79
GRCh38
78
hg19
Lab
100
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
xls
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
27
2
1
tibial artery
19
2
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
4
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